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Journal of Molecular Evolution|November 24, 2020
Site-Specific Amino Acid Distributions Follow a Universal ShapeMackenzie M Johnson, Claus O Wilke
Biorxiv : the Preprint Server for Biology|March 30, 2023
Growth-dependent gene expression variation influences the strength of codon usage biasesMackenzie M Johnson, Adam J Hockenberry, Matthew J McGuffie, et al.
Molecular Biology and Evolution|August 24, 2023
Growth-dependent Gene Expression Variation Influences the Strength of Codon Usage BiasesMackenzie M Johnson, Adam J Hockenberry, Matthew J McGuffie, et al.
Biorxiv : the Preprint Server for Biology|December 9, 2024
Thrifty wide-context models of B cell receptor somatic hypermutationKevin Sung, Mackenzie M Johnson, Will Dumm, et al.
Elife|August 29, 2025
Thrifty wide-context models of B cell receptor somatic hypermutationKevin Sung, Mackenzie M Johnson, Will Dumm, et al.
Molecular Biology and Evolution|November 15, 2018
The Many Nuanced Evolutionary Consequences of Duplicated GenesAshley I Teufel, Mackenzie M Johnson, Jon M Laurent, et al.
Biorxiv : the Preprint Server for Biology|May 4, 2026
Entrenchment of germline amino-acid differences in antibody affinity maturationNoam Harel, Kevin Sung, Will Dumm, et al.
Communications Biology|December 3, 2021
A computational exploration of resilience and evolvability of protein-protein interaction networksBrennan Klein, Ludvig Holmér, Keith M Smith, et al.
Proceedings of the National Academy of Sciences of the United States of America|September 20, 2024
The battle of the sexes in humans is highly polygenicJared M Cole, Carly B Scott, Mackenzie M Johnson, et al.
Biorxiv : the Preprint Server for Biology|November 24, 2025
Separating selection from mutation in antibody language modelsFrederick A Matsen, Will Dumm, Kevin Sung, et al.
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