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Biorxiv : the Preprint Server for Biology|July 16, 2025
Nucleotide context models outperform protein language models for predicting antibody affinity maturationMackenzie M Johnson, Kevin Sung, Hugh K Haddox, et al.
Elife|April 7, 2026
Separating selection from mutation in antibody language modelsFrederick A Matsen, Will Dumm, Kevin Sung, et al.
Molecular Biology and Evolution|August 12, 2025
A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-EncoderFrederick A Matsen, Kevin Sung, Mackenzie M Johnson, et al.
Plos Computational Biology|December 1, 2025
Nucleotide context models outperform protein language models for predicting antibody affinity maturationMackenzie M Johnson, Kevin Sung, Hugh K Haddox, et al.
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