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Current Opinion in Genetics & Development|February 26, 2023
The role of loop extrusion in enhancer-mediated gene activationMagdalena A Karpinska, Aukje Marieke OudelaarNature Communications|April 20, 2022
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCFAbrar Aljahani, Peng Hua, Magdalena A Karpinska, et al.Nature Structural & Molecular Biology|July 10, 2023
The Mediator complex regulates enhancer-promoter interactionsShyam Ramasamy, Abrar Aljahani, Magdalena A Karpinska, et al.Nature Structural & Molecular Biology|May 13, 2025
CTCF depletion decouples enhancer-mediated gene activation from chromatin hub formationMagdalena A Karpinska, Yi Zhu, Zahra Fakhraei Ghazvini, et al.Nature Protocols|February 5, 2022
Capture-C: a modular and flexible approach for high-resolution chromosome conformation captureDamien J Downes, Alastair L Smith, Magdalena A Karpinska, et al.Nature Communications|November 21, 2024
Genome-wide profiling of DNA repair proteins in single cellsKim L de Luca, Pim M J Rullens, Magdalena A Karpinska, et al.Nature Genetics|July 22, 2025
G-quadruplexes are promoter elements controlling nucleosome exclusion and RNA polymerase II pausingCyril Esnault, Amal Zine El Aabidine, Marie-Cécile Robert, et al.Nucleic Acids Research|August 21, 2025
Translocations can drive expression changes of multiple genes in regulons covering entire chromosome armsAnna Oncins, Roser Zaurin, Houyem Toukabri, et al.Pageof 1