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Journal of Bioinformatics and Computational Biology|April 28, 2020
A probabilistic version of Sankoff's maximum parsimony algorithmGábor Balogh, Stephan H Bernhart, Peter F Stadler, et al.Algorithms for Molecular Biology : AMB|February 26, 2016
The paralog-to-contig assignment problem: high quality gene models from fragmented assembliesHenrike Indrischek, Nicolas Wieseke, Peter F Stadler, et al.Bioinformatics (Oxford, England)|April 18, 2019
Automatic curation of large comparative animal MicroRNA datasetsAli M Yazbeck, Peter F Stadler, Kifah Tout, et al.Scientific Data|April 20, 2026
SynRXN: An Open Benchmark and Curated Dataset for Computational Reaction ModelingTieu-Long Phan, Nhu-Ngoc Nguyen Song, Peter F StadlerAdvances in Experimental Medicine and Biology|August 31, 2025
Prediction of Circular RNA Secondary Structures and Their TargetsStephan H Bernhart, Jörg Fallmann, Ronny Lorenz, et al.Bioinformatics (Oxford, England)|April 10, 2004
Alignment of RNA base pairing probability matricesIvo L Hofacker, Stephan H F Bernhart, Peter F StadlerThe Journal of General Virology|April 24, 2004
Conserved RNA secondary structures in Flaviviridae genomesCaroline Thurner, Christina Witwer, Ivo L Hofacker, et al.Algorithms for Molecular Biology : AMB|April 5, 2025
Unbiased anchors for reliable genome-wide synteny detectionKarl K Käther, Andreas Remmel, Steffen Lemke, et al.Journal of Theoretical Biology|May 4, 2007
A stochastic model for the evolution of transcription factor binding site abundanceGünter P Wagner, Wolfgang Otto, Vincent Lynch, et al.Mitochondrion|June 10, 2014
GC skew and mitochondrial origins of replicationAbdullah H Sahyoun, Matthias Bernt, Peter F Stadler, et al.Pageof 57