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Physical Review. E|July 15, 2016
Binding energies of nucleobase complexes: Relevance to homology recognition of DNASergio Cruz León, Mara Prentiss, Maria Fyta
Nucleic Acids Research|September 2, 2016
Single molecule identification of homology-dependent interactions between long ssRNA and dsDNAChenli Liu, Claudia Danilowicz, Nancy Kleckner, et al.
Nucleic Acids Research|August 3, 2019
Weaving DNA strands: structural insight on ATP hydrolysis in RecA-induced homologous recombinationBenjamin Boyer, Claudia Danilowicz, Mara Prentiss, et al.
Plos One|June 27, 2015
ssDNA Pairing Accuracy Increases When Abasic Sites Divide Nucleotides into Small GroupsAlexandra Peacock-Villada, Vincent Coljee, Claudia Danilowicz, et al.
Plos Computational Biology|March 4, 2017
Mechanisms of fast and stringent search in homologous pairing of double-stranded DNAAmir Bitran, Wei-Yin Chiang, Erel Levine, et al.
Nucleic Acids Research|September 19, 2015
Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structureDarren Yang, Benjamin Boyer, Chantal Prévost, et al.
Nucleic Acids Research|June 20, 2015
The poor homology stringency in the heteroduplex allows strand exchange to incorporate desirable mismatches without sacrificing recognition in vivoClaudia Danilowicz, Darren Yang, Craig Kelley, et al.
Nucleic Acids Research|June 3, 2026
Collective interactions along recombinase-bound D-loops could speed repair of double-strand breaks by destabilizing flanking homoduplex tailsClaudia Danilowicz, Ashini Modi, Afra Sabei, et al.
Nucleic Acids Research|September 1, 2017
ATP hydrolysis provides functions that promote rejection of pairings between different copies of long repeated sequencesClaudia Danilowicz, Laura Hermans, Vincent Coljee, et al.
Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics|June 13, 2009
DNA unzipping phase diagram calculated via replica theoryC Brian Roland, Kristi Adamson Hatch, Mara Prentiss, et al.
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