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Proceedings of the National Academy of Sciences of the United States of America|April 25, 2002
Hemagglutinin sequence clusters and the antigenic evolution of influenza A virusJoshua B Plotkin, Jonathan Dushoff, Simon A LevinProceedings of the National Academy of Sciences of the United States of America|September 21, 2011
Reconciling molecular phylogenies with the fossil recordHélène Morlon, Todd L Parsons, Joshua B PlotkinGenetics|August 14, 2012
Why transcription factor binding sites are ten nucleotides longAlexander J Stewart, Sridhar Hannenhalli, Joshua B PlotkinTheoretical Population Biology|October 7, 2008
Absorption and fixation times for neutral and quasi-neutral populations with density dependenceTodd L Parsons, Christopher Quince, Joshua B PlotkinThe American Naturalist|August 19, 2008
Cluster analysis of spatial patterns in Malaysian tree speciesJoshua B Plotkin, Jérôme Chave, Peter S AshtonPlos Computational Biology|November 7, 2015
Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage CoevolutionM Senthil Kumar, Joshua B Plotkin, Sridhar HannenhalliProceedings of the National Academy of Sciences of the United States of America|May 8, 2024
A mechanistic model of gossip, reputations, and cooperationMari Kawakatsu, Taylor A Kessinger, Joshua B PlotkinProceedings of the National Academy of Sciences of the United States of America|August 18, 2004
Tissue-specific codon usage and the expression of human genesJoshua B Plotkin, Harlan Robins, Arnold J LevineEvolution; International Journal of Organic Evolution|July 22, 2015
Detecting epistasis from an ensemble of adapting populationsDavid M McCandlish, Jakub Otwinowski, Joshua B PlotkinGenetics|December 10, 2013
Identifying signatures of selection in genetic time seriesAlison F Feder, Sergey Kryazhimskiy, Joshua B PlotkinPageof 65