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Plos One|March 7, 2012
On docking, scoring and assessing protein-DNA complexes in a rigid-body frameworkMarc Parisien, Karl F Freed, Tobin R SosnickJournal of Molecular Biology|July 16, 2008
Quantifying the structural requirements of the folding transition state of protein A and other systemsMichael C Baxa, Karl F Freed, Tobin R SosnickJournal of Molecular Biology|February 27, 2009
Psi-constrained simulations of protein folding transition states: implications for calculatingMichael C Baxa, Karl F Freed, Tobin R SosnickPhysical Review Letters|July 30, 2013
Simplified protein models: predicting folding pathways and structure using amino acid sequencesAashish N Adhikari, Karl F Freed, Tobin R SosnickProceedings of the National Academy of Sciences of the United States of America|October 10, 2012
De novo prediction of protein folding pathways and structure using the principle of sequential stabilizationAashish N Adhikari, Karl F Freed, Tobin R SosnickBiophysical Journal|October 8, 2019
On the Interpretation of Force-Induced Unfolding Studies of Membrane Proteins Using Fast SimulationsZongan Wang, John M Jumper, Karl F Freed, et al.Biophysical Journal|September 7, 2010
Modeling the hydration layer around proteins: HyPredJouko J Virtanen, Lee Makowski, Tobin R Sosnick, et al.Biophysical Journal|October 19, 2011
Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scatteringJouko Juhani Virtanen, Lee Makowski, Tobin R Sosnick, et al.Proceedings of the National Academy of Sciences of the United States of America|September 1, 2005
Statistical coil model of the unfolded state: resolving the reconciliation problemAbhishek K Jha, Andrés Colubri, Karl F Freed, et al.Journal of Molecular Biology|August 1, 2006
Small proteins fold through transition states with native-like topologiesAdarsh D Pandit, Abhishek Jha, Karl F Freed, et al.Pageof 30