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Bioinformatics Advances|December 25, 2023
PanPA: generation and alignment of panproteome graphsFawaz Dabbaghie, Sanjay K Srikakulam, Tobias Marschall, et al.
Biorxiv : the Preprint Server for Biology|June 25, 2024
Panacus: fast and exact pangenome growth and core size estimationLuca Parmigiani, Erik Garrison, Jens Stoye, et al.
Bioinformatics (Oxford, England)|December 3, 2024
Panacus: fast and exact pangenome growth and core size estimationLuca Parmigiani, Erik Garrison, Jens Stoye, et al.
Genome Research|May 10, 2023
Gaps and complex structurally variant loci in phased genome assembliesDavid Porubsky, Mitchell R Vollger, William T Harvey, et al.
Biorxiv : the Preprint Server for Biology|December 15, 2025
Sequence-to-graph alignment based copy number calling using a network flow formulationHugo Magalhães, Jonas Weber, Gunnar W Klau, et al.
Bioinformatics (Oxford, England)|November 24, 2020
Fast detection of differential chromatin domains with SCIDDOPeter Ebert, Marcel H Schulz
Bioinformatics (Oxford, England)|June 29, 2018
A graph-based approach to diploid genome assemblyShilpa Garg, Mikko Rautiainen, Adam M Novak, et al.
Plos Computational Biology|March 29, 2014
Viral quasispecies assembly via maximal clique enumerationArmin Töpfer, Tobias Marschall, Rowena A Bull, et al.
BMC Bioinformatics|February 11, 2017
PWHATSHAP: efficient haplotyping for future generation sequencingAndrea Bracciali, Marco Aldinucci, Murray Patterson, et al.
Biorxiv : the Preprint Server for Biology|February 24, 2025
Locityper: targeted genotyping of complex polymorphic genesTimofey Prodanov, Elizabeth G Plender, Guiscard Seebohm, et al.
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