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BMC Genomics|November 25, 2016
Modelling microbial metabolic rewiring during growth in a complex mediumMarco Fondi, Emanuele Bosi, Luana Presta, et al.
Systematic and Applied Microbiology|June 6, 2013
Evolution of lactic acid bacteria in the order Lactobacillales as depicted by analysis of glycolysis and pentose phosphate pathwaysElisa Salvetti, Marco Fondi, Renato Fani, et al.
Microbiome Research Reports|March 8, 2024
Yeast metagenomics: analytical challenges in the analysis of the eukaryotic microbiomeSonia Renzi, Stefano Nenciarini, Giovanni Bacci, et al.
FEMS Microbiology Reviews|May 14, 2022
Towards a mechanistic understanding of microalgae-bacteria interactions: integration of metabolomic analysis and computational modelsGiulia Daly, Veronica Ghini, Alessandra Adessi, et al.
International Journal of Evolutionary Biology|January 23, 2015
Network Analysis of Plasmidomes: The Azospirillum brasilense Sp245 CaseValerio Orlandini, Giovanni Emiliani, Marco Fondi, et al.
Nature Communications|May 24, 2020
Genome-scale metabolic reconstruction of the symbiosis between a leguminous plant and a nitrogen-fixing bacteriumGeorge C diCenzo, Michelangelo Tesi, Thomas Pfau, et al.
International Journal of Molecular Sciences|January 8, 2023
Crossing Bacterial Genomic Features and Methylation Patterns with MeStudio: An Epigenomic Analysis ToolChristopher Riccardi, Iacopo Passeri, Lisa Cangioli, et al.
BMC Bioinformatics|December 23, 2008
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2NetworkMatteo Brilli, Alessio Mengoni, Marco Fondi, et al.
Scientific Reports|June 18, 2017
Constraint-based modeling identifies new putative targets to fight colistin-resistant A. baumannii infectionsLuana Presta, Emanuele Bosi, Leila Mansouri, et al.
NPJ Systems Biology and Applications|July 28, 2025
Modeling the metabolic response of A2780 ovarian cancer cells to gold-based cytotoxic drugsWalter Vieri, Veronica Ghini, Paola Turano, et al.
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