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Methods in Molecular Biology (Clifton, N.J.)|May 31, 2024
Family-Free Genome ComparisonMarilia D V Braga, Daniel Doerr, Diego P Rubert, et al.BMC Genomics|April 18, 2020
Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plantsDiego P Rubert, Fábio V Martinez, Jens Stoye, et al.IEEE/ACM Transactions on Computational Biology and Bioinformatics|April 24, 2020
Computing the Inversion-Indel DistanceEyla Willing, Jens Stoye, Marilia D V BragaMethods in Molecular Biology (Clifton, N.J.)|December 27, 2017
Family-Free Genome ComparisonDaniel Doerr, Pedro Feijão, Jens StoyeAlgorithms for Molecular Biology : AMB|June 7, 2025
Reconstructing rearrangement phylogenies of natural genomesLeonard Bohnenkämper, Jens Stoye, Daniel DoerrBMC Genomics|May 11, 2018
GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing dataTizian Schulz, Jens Stoye, Daniel DoerrBMC Bioinformatics|January 4, 2013
Gene family assignment-free comparative genomicsDaniel Doerr, Annelyse Thévenin, Jens StoyeJournal of Bioinformatics and Computational Biology|November 15, 2021
The potential of family-free rearrangements towards gene orthology inferenceDiego P Rubert, Daniel Doerr, Marília D V BragaIEEE Transactions on Computational Biology and Bioinformatics|August 14, 2025
Closing the Complexity Gap of the Double Distance ProblemLuis Cunha, Thiago Lopes, Ueverton Souza, et al.BMC Genomics|January 10, 2015
Identifying gene clusters by discovering common intervals in indeterminate stringsDaniel Doerr, Jens Stoye, Sebastian Böcker, et al.Pageof 12