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Genetics|October 24, 2003
Likelihood models of somatic mutation and codon substitution in cancer genesZiheng Yang, Simon Ro, Bruce Rannala
Journal of Molecular Evolution|January 27, 2004
Likelihood analysis of the chalcone synthase genes suggests the role of positive selection in morning glories (Ipomoea)Ji Yang, Hongya Gu, Ziheng Yang
Systematic Biology|February 14, 2012
Robustness of compound Dirichlet priors for Bayesian inference of branch lengthsChi Zhang, Bruce Rannala, Ziheng Yang
Systematic Biology|October 26, 2005
An empirical examination of the utility of codon-substitution models in phylogeny reconstructionFengrong Ren, Hiroshi Tanaka, Ziheng Yang
Molecular Biology and Evolution|August 19, 2005
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular levelJianzhi Zhang, Rasmus Nielsen, Ziheng Yang
Proceedings of the National Academy of Sciences of the United States of America|July 28, 2025
The power of coalescent methods for inferring recent and ancient gene flow in endangered Bactrian camelsTianqi Zhu, Zhen Wang, Ziheng Yang
Molecular Biology and Evolution|December 13, 2025
On the robustness of Bayesian inference of gene flow to intragenic recombination and natural selectionYuttapong Thawornwattana, Bruce Rannala, Ziheng Yang
Gene|May 27, 2008
A likelihood look at the supermatrix-supertree controversyFengrong Ren, Hiroshi Tanaka, Ziheng Yang
Genetics|May 8, 2015
Evaluation of Ancestral Sequence Reconstruction Methods to Infer Nonstationary Patterns of Nucleotide SubstitutionTomotaka Matsumoto, Hiroshi Akashi, Ziheng Yang
Molecular Phylogenetics and Evolution|July 5, 2011
Bayesian relaxed clock estimation of divergence times in foraminiferaMathieu Groussin, Jan Pawlowski, Ziheng Yang
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