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Molecular Biology and Evolution|September 20, 2006
On the varied pattern of evolution of 2 fungal genomes: a critique of Hughes and FriedmanZiheng YangGenome Biology and Evolution|July 14, 2010
A likelihood ratio test of speciation with gene flow using genomic sequence dataZiheng YangCurrent Opinion in Genetics & Development|November 16, 2002
Inference of selection from multiple species alignmentsZiheng YangMolecular Biology and Evolution|May 8, 2007
PAML 4: phylogenetic analysis by maximum likelihoodZiheng YangGene Expression Patterns : GEP|May 18, 2010
Analysis of the Albumin/alpha-Fetoprotein/Afamin/Group specific component gene family in the context of zebrafish liver differentiationEmily S Noël, Mario Dos Reis, Zoya Arain, et al.Genome Biology and Evolution|April 28, 2017
RelTime Rates Collapse to a Strict Clock When Estimating the Timeline of Animal DiversificationJesus Lozano-Fernandez, Mario Dos Reis, Philip C J Donoghue, et al.Plos Computational Biology|November 14, 2009
Identifying changes in selective constraints: host shifts in influenzaAsif U Tamuri, Mario Dos Reis, Alan J Hay, et al.Molecular Biology and Evolution|November 27, 2010
Charting the host adaptation of influenza virusesMario dos Reis, Asif U Tamuri, Alan J Hay, et al.Systematic Biology|July 14, 2005
Branch-length prior influences Bayesian posterior probability of phylogenyZiheng Yang, Bruce RannalaProceedings of the National Academy of Sciences of the United States of America|February 13, 2018
Bayesian selection of misspecified models is overconfident and may cause spurious posterior probabilities for phylogenetic treesZiheng Yang, Tianqi ZhuPageof 22