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Genes & Development|January 27, 2025
Two unrelated distal genes activated by a shared enhancer benefit from localizing inside the same small topological domainYike Huang, Marjon J A M Verstegen, Sjoerd J D Tjalsma, et al.Nature Genetics|October 16, 2025
Characterization of induced cohesin loop extrusion trajectories in living cellsRuiqi Han, Yike Huang, Michelle J Robers, et al.Molecular Cell|November 4, 2015
CTCF Binding Polarity Determines Chromatin LoopingElzo de Wit, Erica S M Vos, Sjoerd J B Holwerda, et al.Cell Genomics|February 26, 2025
Long-range enhancer-controlled genes are hypersensitive to regulatory factor perturbationsSjoerd J D Tjalsma, Niels J Rinzema, Marjon J A M Verstegen, et al.Molecular Cell|July 1, 2021
Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expressionErica S M Vos, Christian Valdes-Quezada, Yike Huang, et al.Nature Protocols|January 15, 2020
Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologiesCarlo Vermeulen, Amin Allahyar, Britta A M Bouwman, et al.Molecular Cell|February 3, 2016
Cause and Consequence of Tethering a SubTAD to Different Nuclear CompartmentsPatrick J Wijchers, Peter H L Krijger, Geert Geeven, et al.Nature|July 26, 2013
The pluripotent genome in three dimensions is shaped around pluripotency factorsElzo de Wit, Britta A M Bouwman, Yun Zhu, et al.Nucleic Acids Research|June 11, 2013
Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cellsSjoerd J B Holwerda, Harmen J G van de Werken, Claudia Ribeiro de Almeida, et al.Nature Structural & Molecular Biology|June 17, 2022
Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genesNiels J Rinzema, Konstantinos Sofiadis, Sjoerd J D Tjalsma, et al.Pageof 2