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Peerj|May 19, 2016
PhySortR: a fast, flexible tool for sorting phylogenetic trees in RTimothy G Stephens, Debashish Bhattacharya, Mark A Ragan, et al.Journal of Chemical Information and Modeling|April 22, 2010
A semantic web ontology for small molecules and their biological targetsJooyoung Choi, Melissa J Davis, Andrew F Newman, et al.Plos One|February 21, 2009
Are protein domains modules of lateral genetic transfer?Cheong Xin Chan, Aaron E Darling, Robert G Beiko, et al.European Journal of Human Genetics : EJHG|June 5, 2008
Identification of human haploinsufficient genes and their genomic proximity to segmental duplicationsVinh T Dang, Karin S Kassahn, Andrés Esteban Marcos, et al.BMC Bioinformatics|February 26, 2014
RMaNI: Regulatory Module Network Inference frameworkPiyush B Madhamshettiwar, Stefan R Maetschke, Melissa J Davis, et al.Systematic Biology|July 22, 2006
Searching for convergence in phylogenetic Markov chain Monte CarloRobert G Beiko, Jonathan M Keith, Timothy J Harlow, et al.Briefings in Bioinformatics|August 16, 2013
Extracting reaction networks from databases-opening Pandora's boxLiam G Fearnley, Melissa J Davis, Mark A Ragan, et al.Briefings in Bioinformatics|May 24, 2013
Supervised, semi-supervised and unsupervised inference of gene regulatory networksStefan R Maetschke, Piyush B Madhamshettiwar, Melissa J Davis, et al.Plos One|May 30, 2009
Transcriptome-wide prediction of miRNA targets in human and mouse using FASTHChikako Ragan, Nicole Cloonan, Sean M Grimmond, et al.Trends in Ecology & Evolution|May 16, 2019
Genome Evolution of Coral Reef Symbionts as Intracellular ResidentsRaúl A González-Pech, Debashish Bhattacharya, Mark A Ragan, et al.Pageof 14