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Bioinformatics (Oxford, England)|September 21, 2007
Moderated statistical tests for assessing differences in tag abundanceMark D Robinson, Gordon K SmythBiostatistics (Oxford, England)|August 31, 2007
Small-sample estimation of negative binomial dispersion, with applications to SAGE dataMark D Robinson, Gordon K SmythBioinformatics (Oxford, England)|November 14, 2009
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataMark D Robinson, Davis J McCarthy, Gordon K SmythNature Protocols|August 27, 2013
Count-based differential expression analysis of RNA sequencing data using R and BioconductorSimon Anders, Davis J McCarthy, Yunshun Chen, et al.Statistical Applications in Genetics and Molecular Biology|May 2, 2006
Linear models and empirical bayes methods for assessing differential expression in microarray experimentsGordon K SmythJournal of Immunological Methods|July 2, 2009
ELDA: extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assaysYifang Hu, Gordon K SmythNucleic Acids Research|May 29, 2012
Camera: a competitive gene set test accounting for inter-gene correlationDi Wu, Gordon K SmythStatistical Applications in Genetics and Molecular Biology|November 4, 2010
Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawnBelinda Phipson, Gordon K SmythBioinformatics (Oxford, England)|April 17, 2023
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomicsMengbo Li, Gordon K SmythMethods (San Diego, Calif.)|November 5, 2003
Normalization of cDNA microarray dataGordon K Smyth, Terry SpeedPageof 44