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Plos One|June 27, 2014
Bayesian genome assembly and assessment by markov chain monte carlo samplingMark Howison, Felipe Zapata, Erika J Edwards, et al.Bioinformatics (Oxford, England)|September 12, 2013
Toward a statistically explicit understanding of de novo sequence assemblyMark Howison, Felipe Zapata, Casey W DunnBMC Bioinformatics|November 21, 2013
Agalma: an automated phylogenomics workflowCasey W Dunn, Mark Howison, Felipe ZapataMolecular Biology and Evolution|February 8, 2022
Evolution of Gene Expression across Species and Specialized Zooids in SiphonophoraCatriona Munro, Felipe Zapata, Mark Howison, et al.Plos One|January 12, 2021
Revising transcriptome assemblies with phylogenetic informationAugust Guang, Mark Howison, Felipe Zapata, et al.Trends in Ecology & Evolution|January 19, 2016
An Integrated Perspective on Phylogenetic WorkflowsAugust Guang, Felipe Zapata, Mark Howison, et al.Plos Computational Biology|November 25, 2025
T-shaped alignments integrating HIV-1 near full-length genome and partial pol sequences can improve phylogenetic inference of transmission clustersAugust Guang, Casey W Dunn, Vlad Novitsky, et al.Proceedings. Biological Sciences|September 19, 2014
Phylogenomic analyses of deep gastropod relationships reject OrthogastropodaFelipe Zapata, Nerida G Wilson, Mark Howison, et al.Proceedings of the National Academy of Sciences of the United States of America|January 6, 2018
Pairwise comparisons across species are problematic when analyzing functional genomic dataCasey W Dunn, Felipe Zapata, Catriona Munro, et al.Molecular Phylogenetics and Evolution|June 26, 2018
Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolutionCatriona Munro, Stefan Siebert, Felipe Zapata, et al.Pageof 23