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Medrxiv : the Preprint Server for Health Sciences|December 16, 2024
Frequency dynamics predict viral fitness, antigenic relationships and epidemic growthMarlin D Figgins, Trevor BedfordElife|July 9, 2026
Inferring variant-specific effective reproduction numbers from combined case and sequencing dataMarlin D Figgins, Trevor BedfordElife|February 23, 2026
High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strainsCaroline Kikawa, Andrea N Loes, John Huddleston, et al.Nature|July 3, 2024
Spike deep mutational scanning helps predict success of SARS-CoV-2 cladesBernadeta Dadonaite, Jack Brown, Teagan E McMahon, et al.Biorxiv : the Preprint Server for Biology|March 31, 2025
High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strainsCaroline Kikawa, Andrea N Loes, John Huddleston, et al.Biorxiv : the Preprint Server for Biology|November 26, 2025
Hidden Markov Models Detect Recombination and Ancestry of SARS-CoV-2Nobuaki Masaki, Trevor BedfordMedrxiv : the Preprint Server for Health Sciences|September 24, 2024
Timely vaccine strain selection and genomic surveillance improves evolutionary forecast accuracy of seasonal influenza A/H3N2John Huddleston, Trevor BedfordBMC Evolutionary Biology|December 28, 2019
The ability of single genes vs full genomes to resolve time and space in outbreak analysisGytis Dudas, Trevor BedfordElife|December 4, 2025
Timely vaccine strain selection and genomic surveillance improve evolutionary forecast accuracy of seasonal influenza A/H3N2John Huddleston, Trevor BedfordMolecular Biology and Evolution|September 20, 2025
Seasonal Influenza Viruses Show Distinct Adaptive Dynamics During Growth in Chicken EggsKathryn Kistler, Trevor BedfordPageof 17