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Nucleic Acids Research|May 5, 2017
IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactionsMartin Mann, Patrick R Wright, Rolf Backofen
BMC Bioinformatics|May 31, 2011
Structator: fast index-based search for RNA sequence-structure patternsFernando Meyer, Stefan Kurtz, Rolf Backofen, et al.
Bioinformatics (Oxford, England)|April 4, 2015
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristicsSebastian Will, Christina Otto, Milad Miladi, et al.
HFSP Journal|May 14, 2009
Classifying proteinlike sequences in arbitrary lattice protein models using LatPackMartin Mann, Daniel Maticzka, Rhodri Saunders, et al.
BMC Bioinformatics|November 20, 2015
antaRNA--Multi-objective inverse folding of pseudoknot RNA using ant-colony optimizationRobert Kleinkauf, Torsten Houwaart, Rolf Backofen, et al.
Bioinformatics (Oxford, England)|May 30, 2014
MoDPepInt: an interactive web server for prediction of modular domain-peptide interactionsKousik Kundu, Martin Mann, Fabrizio Costa, et al.
Algorithms for Molecular Biology : AMB|January 4, 2011
Sparsification of RNA structure prediction including pseudoknotsMathias Möhl, Raheleh Salari, Sebastian Will, et al.
Journal of Bioinformatics and Computational Biology|December 21, 2019
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target predictionRick Gelhausen, Sebastian Will, Ivo L Hofacker, et al.
Nucleic Acids Research|May 7, 2010
Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNACameron Smith, Steffen Heyne, Andreas S Richter, et al.
Plos Computational Biology|April 17, 2007
Inferring noncoding RNA families and classes by means of genome-scale structure-based clusteringSebastian Will, Kristin Reiche, Ivo L Hofacker, et al.
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