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Nature Communications|September 13, 2018
GraphDDP: a graph-embedding approach to detect differentiation pathways in single-cell-data using prior class knowledgeFabrizio Costa, Dominic Grün, Rolf BackofenBioinformatics (Oxford, England)|July 2, 2013
A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human SH3 domainsKousik Kundu, Fabrizio Costa, Rolf BackofenAlgorithms for Molecular Biology : AMB|January 6, 2010
Fast prediction of RNA-RNA interactionRaheleh Salari, Rolf Backofen, S Cenk SahinalpNucleic Acids Research|October 7, 2008
Unifying evolutionary and thermodynamic information for RNA folding of multiple alignmentsStefan E Seemann, Jan Gorodkin, Rolf BackofenNucleic Acids Research|May 20, 2014
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domainsPatrick R Wright, Jens Georg, Martin Mann, et al.Bioinformatics (Oxford, England)|October 23, 2008
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regionsAnke Busch, Andreas S Richter, Rolf BackofenBMC Genomics|December 18, 2020
Improving CLIP-seq data analysis by incorporating transcript informationMichael Uhl, Van Dinh Tran, Rolf BackofenIn Silico Biology|January 25, 2003
Protein similarity search under mRNA structural constraints: application to targeted selenocysteine insertionRolf Backofen, N S Narayanaswamy, Firas SwidanGigascience|October 10, 2024
Deepdefense: annotation of immune systems in prokaryotes using deep learningSven Hauns, Omer S Alkhnbashi, Rolf BackofenBioinformatics (Oxford, England)|June 13, 2012
GraphClust: alignment-free structural clustering of local RNA secondary structuresSteffen Heyne, Fabrizio Costa, Dominic Rose, et al.Pageof 32