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Molecular Neurodegeneration|November 28, 2021
MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegenerationThomas Wallach, Zoé J Mossmann, Michal Szczepek, et al.
International Journal of Molecular Sciences|June 3, 2020
CopomuS-Ranking Compensatory Mutations to Guide RNA-RNA Interaction Verification ExperimentsMartin Raden, Fabio Gutmann, Michael Uhl, et al.
Bioinformatics (Oxford, England)|March 24, 2017
RNAscClust: clustering RNA sequences using structure conservation and graph based motifsMilad Miladi, Alexander Junge, Fabrizio Costa, et al.
Nature Communications|June 14, 2019
A pan-cancer analysis of synonymous mutationsYogita Sharma, Milad Miladi, Sandeep Dukare, et al.
NAR Genomics and Bioinformatics|August 12, 2024
Clusters of mammalian conserved RNA structures in UTRs associate with RBP binding sitesVeerendra P Gadekar, Alexander Welford Munk, Milad Miladi, et al.
Plos Computational Biology|August 31, 2018
Interactive implementations of thermodynamics-based RNA structure and RNA-RNA interaction prediction approaches for example-driven teachingMartin Raden, Mostafa Mahmoud Mohamed, Syed Mohsin Ali, et al.
BMC Bioinformatics|January 15, 2020
The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessmentMartin Raden, Teresa Müller, Stefan Mautner, et al.
Nucleic Acids Research|November 14, 2023
Improved discovery of RNA-binding protein binding sites in eCLIP data using DEWSeqThomas Schwarzl, Sudeep Sahadevan, Benjamin Lang, et al.
Journal of Bioinformatics and Computational Biology|December 21, 2019
IntaRNAhelix-composing RNA-RNA interactions from stable inter-molecular helices boosts bacterial sRNA target predictionRick Gelhausen, Sebastian Will, Ivo L Hofacker, et al.
Gigascience|June 5, 2024
CheRRI-Accurate classification of the biological relevance of putative RNA-RNA interaction sitesTeresa Müller, Stefan Mautner, Pavankumar Videm, et al.
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