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Methods in Molecular Biology (Clifton, N.J.)|April 14, 2019
Peptide-to-Protein Summarization: An Important Step for Accurate Quantification in Label-Based ProteomicsMartina Fischer, Thilo Muth, Bernhard Y RenardBriefings in Bioinformatics|April 4, 2017
Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?Thilo Muth, Bernhard Y RenardExpert Review of Proteomics|July 5, 2016
Metaproteomic data analysis at a glance: advances in computational microbial community proteomicsThilo Muth, Bernhard Y Renard, Lennart MartensMethods in Molecular Biology (Clifton, N.J.)|October 22, 2024
Moving Toward Metaproteogenomics: A Computational Perspective on Analyzing Microbial Samples via ProteogenomicsFranziska Singer, Mathias Kuhring, Bernhard Y Renard, et al.Bioinformatics (Oxford, England)|November 22, 2015
iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantificationMartina Fischer, Bernhard Y RenardProteomics|July 4, 2018
A Potential Golden Age to Come-Current Tools, Recent Use Cases, and Future Avenues for De Novo Sequencing in ProteomicsThilo Muth, Felix Hartkopf, Marc Vaudel, et al.Journal of Proteome Research|May 5, 2020
TaxIt: An Iterative Computational Pipeline for Untargeted Strain-Level Identification Using MS/MS Spectra from Pathogenic Single-Organism SamplesMathias Kuhring, Joerg Doellinger, Andreas Nitsche, et al.Bioinformatics (Oxford, England)|September 9, 2017
Abundance estimation and differential testing on strain level in metagenomics dataMartina Fischer, Benjamin Strauch, Bernhard Y RenardBioinformatics (Oxford, England)|July 7, 2026
Foundation model enables interpretable open and error-tolerant searching for mass spectrometry-based proteomicsTom Altenburg, Thilo Muth, Patrick van Zalm, et al.Briefings in Bioinformatics|December 22, 2022
Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assemblyDenis Beslic, Georg Tscheuschner, Bernhard Y Renard, et al.Pageof 16