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Molecular Biology and Evolution|May 19, 2016
Fast Coalescent-Based Computation of Local Branch Support from Quartet FrequenciesErfan Sayyari, Siavash MirarabSystematic Biology|November 23, 2017
A Two-State Model of Tree Evolution and Its Applications to Alu RetrotranspositionNiema Moshiri, Siavash MirarabBioinformatics (Oxford, England)|June 15, 2015
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genesSiavash Mirarab, Tandy WarnowBioinformatics (Oxford, England)|September 12, 2022
ASTRAL-Pro 2: ultrafast species tree reconstruction from multi-copy gene family treesChao Zhang, Siavash MirarabMethods in Molecular Biology (Clifton, N.J.)|September 9, 2022
Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene PhylogeniesQiyun Zhu, Siavash MirarabBMC Genomics|May 11, 2018
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic treesUyen Mai, Siavash MirarabBioinformatics (Oxford, England)|October 11, 2011
FastSP: linear time calculation of alignment accuracySiavash Mirarab, Tandy WarnowGenes|March 3, 2018
Testing for Polytomies in Phylogenetic Species Trees Using Quartet FrequenciesErfan Sayyari, Siavash MirarabMolecular Biology and Evolution|September 4, 2020
Log Transformation Improves Dating of PhylogeniesUyen Mai, Siavash MirarabMolecular Biology and Evolution|October 6, 2022
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species TreesChao Zhang, Siavash MirarabPageof 12