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Plos Computational Biology|November 8, 2021
GPRuler: Metabolic gene-protein-reaction rules automatic reconstructionMarzia Di Filippo, Chiara Damiani, Dario Pescini
Bioinformatics (Oxford, England)|September 9, 2017
popFBA: tackling intratumour heterogeneity with Flux Balance AnalysisChiara Damiani, Marzia Di Filippo, Dario Pescini, et al.
Methods in Molecular Biology (Clifton, N.J.)|January 2, 2020
Single-cell Digital Twins for Cancer Preclinical InvestigationMarzia Di Filippo, Chiara Damiani, Marco Vanoni, et al.
Computational Biology and Chemistry|April 18, 2016
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based modelsMarzia Di Filippo, Riccardo Colombo, Chiara Damiani, et al.
Computational and Structural Biotechnology Journal|May 7, 2020
MaREA4Galaxy: Metabolic reaction enrichment analysis and visualization of RNA-seq data within GalaxyChiara Damiani, Lorenzo Rovida, Davide Maspero, et al.
Plos Computational Biology|March 1, 2019
Integration of single-cell RNA-seq data into population models to characterize cancer metabolismChiara Damiani, Davide Maspero, Marzia Di Filippo, et al.
Plos Computational Biology|February 7, 2022
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulationMarzia Di Filippo, Dario Pescini, Bruno Giovanni Galuzzi, et al.
BMC Bioinformatics|April 27, 2021
Accelerated global sensitivity analysis of genome-wide constraint-based metabolic modelsMarco S Nobile, Vasco Coelho, Dario Pescini, et al.
BMC Bioinformatics|August 2, 2018
Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypesRiccardo Colombo, Chiara Damiani, David Gilbert, et al.
JMIR Human Factors|August 5, 2022
A Mobile App Leveraging Citizenship Engagement to Perform Anonymized Longitudinal Studies in the Context of COVID-19 Adverse Drug Reaction Monitoring: Development and Usability StudyMarzia Di Filippo, Alessandro Avellone, Michael Belingheri, et al.
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