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Masataka Yamauchi

Showing results (1-10 of 10) with videos related to

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Journal of Chemical Information and Modeling|February 24, 2021
Dimerization of α-Synuclein Fragments Studied by Isothermal-Isobaric Replica-Permutation Molecular Dynamics SimulationMasataka Yamauchi, Hisashi Okumura
Journal of Computational Chemistry|August 1, 2019
Replica sub-permutation method for molecular dynamics and monte carlo simulationsMasataka Yamauchi, Hisashi Okumura
The Journal of Chemical Physics|November 17, 2017
Development of isothermal-isobaric replica-permutation method for molecular dynamics and Monte Carlo simulations and its application to reveal temperature and pressure dependence of folded, misfolded, and unfolded states of chignolinMasataka Yamauchi, Hisashi Okumura
Biophysical Reviews|May 23, 2019
Molecular simulations by generalized-ensemble algorithms in isothermal-isobaric ensembleMasataka Yamauchi, Yoshiharu Mori, Hisashi Okumura
Journal of Computational Chemistry|July 8, 2026
OpenCafeMol With 3SPN.2 DNA Model: GPU Acceleration for Long-Time Coarse-Grained Chromatin SimulationsMasataka Yamauchi, Yutaka Murata, Toru Niina, et al.
Journal of Computational Chemistry|November 8, 2022
Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiencyDaiki Fukuhara, Masataka Yamauchi, Satoru G Itoh, et al.
Elife|April 22, 2026
SMC complex unidirectionally translocates DNA by coupling segment capture with an asymmetric kleisin pathMasataka Yamauchi, Giovanni Bruno Brandani, Tsuyoshi Terakawa, et al.
Current Opinion in Structural Biology|October 24, 2022
Molecular dynamics simulations for the study of chromatin biologyGiovanni B Brandani, Soundhararajan Gopi, Masataka Yamauchi, et al.
Nature Communications|November 21, 2025
Mechanistic models of asymmetric hand-over-hand translocation and nucleosome navigation by CMG helicaseFritz Nagae, Yutaka Murata, Masataka Yamauchi, et al.
Nature Communications|February 19, 2025
Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structureKodai Yamaura, Naomichi Takemata, Masashi Kariya, et al.
Pageof 1

Showing results (1-10 of 10) with videos related to

Sort By:
Pageof 1
Journal of Chemical Information and Modeling|February 24, 2021
Dimerization of α-Synuclein Fragments Studied by Isothermal-Isobaric Replica-Permutation Molecular Dynamics SimulationMasataka Yamauchi, Hisashi Okumura
Journal of Computational Chemistry|August 1, 2019
Replica sub-permutation method for molecular dynamics and monte carlo simulationsMasataka Yamauchi, Hisashi Okumura
The Journal of Chemical Physics|November 17, 2017
Development of isothermal-isobaric replica-permutation method for molecular dynamics and Monte Carlo simulations and its application to reveal temperature and pressure dependence of folded, misfolded, and unfolded states of chignolinMasataka Yamauchi, Hisashi Okumura
Biophysical Reviews|May 23, 2019
Molecular simulations by generalized-ensemble algorithms in isothermal-isobaric ensembleMasataka Yamauchi, Yoshiharu Mori, Hisashi Okumura
Journal of Computational Chemistry|July 8, 2026
OpenCafeMol With 3SPN.2 DNA Model: GPU Acceleration for Long-Time Coarse-Grained Chromatin SimulationsMasataka Yamauchi, Yutaka Murata, Toru Niina, et al.
Journal of Computational Chemistry|November 8, 2022
Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiencyDaiki Fukuhara, Masataka Yamauchi, Satoru G Itoh, et al.
Elife|April 22, 2026
SMC complex unidirectionally translocates DNA by coupling segment capture with an asymmetric kleisin pathMasataka Yamauchi, Giovanni Bruno Brandani, Tsuyoshi Terakawa, et al.
Current Opinion in Structural Biology|October 24, 2022
Molecular dynamics simulations for the study of chromatin biologyGiovanni B Brandani, Soundhararajan Gopi, Masataka Yamauchi, et al.
Nature Communications|November 21, 2025
Mechanistic models of asymmetric hand-over-hand translocation and nucleosome navigation by CMG helicaseFritz Nagae, Yutaka Murata, Masataka Yamauchi, et al.
Nature Communications|February 19, 2025
Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structureKodai Yamaura, Naomichi Takemata, Masashi Kariya, et al.
Pageof 1