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Journal of Chemical Theory and Computation|November 6, 2023
Multiscale, Multiresolution Coarse-Grained Model via a Hybrid Approach: Solvation, Structure, and Self-Assembly of Aromatic TripeptidesMason Hooten, Akash Banerjee, Meenakshi DuttLangmuir : the ACS Journal of Surfaces and Colloids|February 21, 2023
Self-Organization of Mobile, Polyelectrolytic Dendrons on Stable, Amphiphile-Based Spherical SurfacesAkash Banerjee, Meenakshi DuttThe Journal of Chemical Physics|March 22, 2023
A hybrid approach for coarse-graining helical peptoids: Solvation, secondary structure, and assemblyAkash Banerjee, Meenakshi DuttNanoscale Advances|September 22, 2022
Dendronized vesicles: formation, self-organization of dendron-grafted amphiphiles and stabilityAkash Banerjee, Acacia Tam, Meenakshi DuttPhysical Chemistry Chemical Physics : PCCP|December 23, 2021
A hybrid coarse-grained model for structure, solvation and assembly of lipid-like peptidesAkash Banerjee, Chien Yu Lu, Meenakshi DuttJournal of Physics. Condensed Matter : an Institute of Physics Journal|July 23, 2025
Applications of enhanced sampling methods to biomolecular self-assembly: a reviewMason Hooten, Het Patel, Yiwei Shao, et al.The Journal of Chemical Physics|April 3, 2025
Martini 3 coarse-grained model of enzymes: Framework with validation by all-atom simulations and x-ray diffraction measurementsMason Hooten, N Sanjeeva Murthy, Nityananda Pal, et al.The Journal of Physical Chemistry. B|June 25, 2016
Surface Reconfiguration of Binary Lipid Vesicles via Electrostatically Induced Nanoparticle AdsorptionFikret Aydin, Meenakshi DuttThe Journal of Physical Chemistry. B|July 3, 2014
Bioinspired vesicles encompassing two-tail phospholipids: self-assembly and phase segregation via implicit solvent coarse-grained molecular dynamicsFikret Aydin, Meenakshi DuttPhysical Chemistry Chemical Physics : PCCP|March 26, 2015
Design of PAMAM-COO dendron-grafted surfaces to promote Pb(II) ion adsorptionLeebyn Chong, Meenakshi DuttPageof 4