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Bioinformatics (Oxford, England)|June 30, 2022
PScL-DDCFPred: an ensemble deep learning-based approach for characterizing multiclass subcellular localization of human proteins from bioimage dataMatee Ullah, Fazal Hadi, Jiangning Song, et al.Bioinformatics (Oxford, England)|November 22, 2022
PScL-2LSAESM: bioimage-based prediction of protein subcellular localization by integrating heterogeneous features with the two-level SAE-SM and mean ensemble methodMatee Ullah, Fazal Hadi, Jiangning Song, et al.Briefings in Bioinformatics|August 2, 2021
PScL-HDeep: image-based prediction of protein subcellular location in human tissue using ensemble learning of handcrafted and deep learned features with two-layer feature selectionMatee Ullah, Ke Han, Fazal Hadi, et al.IEEE Transactions on Computational Biology and Bioinformatics|August 14, 2025
PScL-SDNNMAE: Protein Subcellular Localization Prediction Using Classical and Masked Autoencoder-Based Multi-View Features With Ensemble Feature SelectionShenjian Gu, Matee Ullah, Jiangning Song, et al.Briefings in Bioinformatics|April 10, 2021
SAResNet: self-attention residual network for predicting DNA-protein bindingLong-Chen Shen, Yan Liu, Jiangning Song, et al.Journal of Chemical Information and Modeling|June 25, 2025
Dual-Branch Contrastive Network with Deep Separable Convolution for Enhanced 6mA Site IdentificationYouwei Sun, Zhifei Wang, Ying Zhang, et al.Analytical Biochemistry|April 29, 2022
Performing protein fold recognition by exploiting a stack convolutional neural network with the attention mechanismKe Han, Yan Liu, Jian Xu, et al.Briefings in Bioinformatics|February 4, 2021
Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretationYan Liu, Yi-Heng Zhu, Xiaoning Song, et al.Clinical Anatomy (New York, N.Y.)|August 29, 2006
Anomalous muscle adjacent to temporalisMatee Ullah, Tanvir KhanIEEE/ACM Transactions on Computational Biology and Bioinformatics|April 12, 2024
TransC-ac4C: Identification of N4-Acetylcytidine (ac4C) Sites in mRNA Using Deep LearningDian Liu, Zi Liu, Yunpeng Xia, et al.Pageof 45