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Bioinformatics (Oxford, England)|October 31, 2022
ConsensuSV-from the whole-genome sequencing data to the complete variant listMateusz Chiliński, Dariusz Plewczynski
BMC Genomics|October 15, 2024
HiCDiffusion - diffusion-enhanced, transformer-based prediction of chromatin interactions from DNA sequencesMateusz Chiliński, Dariusz Plewczynski
Seminars in Cell & Developmental Biology|August 25, 2021
From DNA human sequence to the chromatin higher order organisation and its biological meaning: Using biomolecular interaction networks to understand the influence of structural variation on spatial genome organisation and its functional effectMateusz Chiliński, Kaustav Sengupta, Dariusz Plewczynski
Quantitative Biology (Beijing, China)|February 12, 2026
Prediction of chromatin looping using deep hybrid learning (DHL)Mateusz Chiliński, Anup Kumar Halder, Dariusz Plewczynski
Scientific Reports|May 17, 2025
ConsensuSV-ONT - A modern method for accurate structural variant callingAntoni Pietryga, Mateusz Chiliński, Sachin Gadakh, et al.
Methods (San Diego, Calif.)|April 18, 2024
Chromatin image-driven modellingMichał Kadlof, Krzysztof Banecki, Mateusz Chiliński, et al.
Scientific Reports|July 20, 2023
Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactionsMateusz Chiliński, Jakub Lipiński, Abhishek Agarwal, et al.
Biorxiv : the Preprint Server for Biology|April 17, 2023
Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactionsMateusz Chiliński, Jakub Lipiński, Abhishek Agarwal, et al.
International Journal of Molecular Sciences|June 19, 2024
Structural Variants and Implicated Processes Associated with Familial Tourette SyndromeJakub P Fichna, Mateusz Chiliński, Anup Kumar Halder, et al.
Computational and Structural Biotechnology Journal|July 21, 2022
Multi-scale phase separation by explosive percolation with single-chromatin loop resolutionKaustav Sengupta, Michał Denkiewicz, Mateusz Chiliński, et al.
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