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Plos One|May 20, 2026
Cache-efficient and vectorized parallel dynamic programming for RNA foldingMateusz Gruzewski, Marek PalkowskiBMC Bioinformatics|January 17, 2018
Tuning iteration space slicing based tiled multi-core code implementing Nussinov's RNA foldingMarek Palkowski, Wlodzimierz BieleckiJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|July 12, 2018
Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three SequencesMarek Palkowski, Wlodzimierz BieleckiBMC Bioinformatics|April 25, 2019
Tiling Nussinov's RNA folding loop nest with a space-time approachMarek Palkowski, Wlodzimierz BieleckiBMC Bioinformatics|June 6, 2017
Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewingMarek Palkowski, Wlodzimierz BieleckiPageof 1