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Frontiers in Genetics|July 19, 2021
Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During InfectionsMatineh Rahmatbakhsh, Alla Gagarinova, Mohan BabuBioinformatics Advances|June 7, 2022
HPiP: an R/Bioconductor package for predicting host-pathogen protein-protein interactions from protein sequences using ensemble machine learning approachMatineh Rahmatbakhsh, Mohamed Taha Moutaoufik, Alla Gagarinova, et al.Nature Protocols|November 21, 2023
Co-fractionation-mass spectrometry to characterize native mitochondrial protein assemblies in mammalian neurons and brainMara Zilocchi, Matineh Rahmatbakhsh, Mohamed Taha Moutaoufik, et al.Nature Communications|July 14, 2022
Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coliAlla Gagarinova, Ali Hosseinnia, Matineh Rahmatbakhsh, et al.Nature Communications|July 2, 2025
Human protein interaction networks of ancestral and variant SARS-CoV-2 in organ-specific cells and bodily fluidsKirsten Broderick, Mohamed Taha Moutaoufik, Tatiana Saccon, et al.Pageof 1