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Journal of Molecular Biology|February 19, 2003
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexesTanja Kortemme, Alexandre V Morozov, David BakerCurrent Opinion in Structural Biology|September 19, 2021
Design principles of protein switchesRobert G Alberstein, Amy B Guo, Tanja KortemmeBiorxiv : the Preprint Server for Biology|February 13, 2023
Multi-input drug-controlled switches of mammalian gene expression based on engineered nuclear hormone receptorsSimon Kretschmer, Nicholas Perry, Yang Zhang, et al.Proteins|January 15, 2005
A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfacesLin Jiang, Brian Kuhlman, Tanja Kortemme, et al.Plos Computational Biology|September 24, 2015
Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand SpecificityNoah Ollikainen, René M de Jong, Tanja KortemmeACS Synthetic Biology|June 14, 2023
Multi-input Drug-Controlled Switches of Mammalian Gene Expression Based on Engineered Nuclear Hormone ReceptorsSimon Kretschmer, Nicholas Perry, Yang Zhang, et al.Nature Nanotechnology|November 26, 2013
Reprogramming an ATP-driven protein machine into a light-gated nanocageDaniel Hoersch, Soung-Hun Roh, Wah Chiu, et al.Biorxiv : the Preprint Server for Biology|August 6, 2025
A combinatorial mutational map of active non-native protein kinases by deep learning guided sequence designKosuke Seki, Amy B Guo, Deniz Akpinaroglu, et al.Proceedings of the National Academy of Sciences of the United States of America|May 1, 2004
Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculationsAlexandre V Morozov, Tanja Kortemme, Kiril Tsemekhman, et al.Journal of Molecular Biology|September 10, 2002
Simple physical models connect theory and experiment in protein folding kineticsEric Alm, Alexandre V Morozov, Tanja Kortemme, et al.Pageof 13