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Journal of the American Chemical Society|August 9, 2013
Design of a photoswitchable cadherinRyan S Ritterson, Kristopher M Kuchenbecker, Michael Michalik, et al.Nucleic Acids Research|October 2, 2004
A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoysYu Chen, Tanja Kortemme, Tim Robertson, et al.Journal of Molecular Biology|July 13, 2006
Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interfaceLukasz A Joachimiak, Tanja Kortemme, Barry L Stoddard, et al.Methods in Molecular Biology (Clifton, N.J.)|April 21, 2016
Design of Light-Controlled Protein Conformations and FunctionsRyan S Ritterson, Daniel Hoersch, Kyle A Barlow, et al.Methods in Enzymology|February 21, 2013
Flexible backbone sampling methods to model and design protein alternative conformationsNoah Ollikainen, Colin A Smith, James S Fraser, et al.Proceedings of the National Academy of Sciences of the United States of America|October 15, 2014
Quantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognitionCristina Melero, Noah Ollikainen, Ian Harwood, et al.Elife|July 24, 2020
Altered expression of a quality control protease in E. coli reshapes the in vivo mutational landscape of a model enzymeSamuel Thompson, Yang Zhang, Christine Ingle, et al.Journal of Molecular Biology|June 13, 2008
A simple model of backbone flexibility improves modeling of side-chain conformational variabilityGregory D Friedland, Anthony J Linares, Colin A Smith, et al.Biorxiv : the Preprint Server for Biology|July 29, 2024
Deep learning guided design of dynamic proteinsAmy B Guo, Deniz Akpinaroglu, Mark J S Kelly, et al.Plos Computational Biology|May 30, 2009
A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its familyGregory D Friedland, Nils-Alexander Lakomek, Christian Griesinger, et al.Pageof 13