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Microbiome|December 14, 2019
Applying indirect open-circuit calorimetry to study energy expenditure in gnotobiotic mice harboring different human gut microbial communitiesIlia G Halatchev, David O'Donnell, Matthew C Hibberd, et al.Annals of the New York Academy of Sciences|September 19, 2024
Establishing human microbial observatory programs in low- and middle-income countriesJeffrey I Gordon, Michael J Barratt, Matthew C Hibberd, et al.Biorxiv : the Preprint Server for Biology|September 26, 2025
Systematic evaluation of metatranscriptomic differential gene expression in silico, in vitro, and in vivo enables elucidation of inter-species cross-feedingEvan M Lee, Nathan P McNulty, Jiye Cheng, et al.Nature Communications|April 21, 2026
Enhancing inference of differential gene expression in metatranscriptomes from human microbial communitiesEvan M Lee, Nathan P McNulty, Matthew C Hibberd, et al.Proceedings of the National Academy of Sciences of the United States of America|January 24, 2020
Identifying determinants of bacterial fitness in a model of human gut microbial successionLihui Feng, Arjun S Raman, Matthew C Hibberd, et al.Journal of Microbiological Methods|October 2, 2018
A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communitiesAndrew E Schriefer, Paul F Cliften, Matthew C Hibberd, et al.Biorxiv : the Preprint Server for Biology|November 19, 2025
Using gnotobiotic mice to decipher effects of gut microbiome repair in undernourished children on tuft and goblet cell functionYi Wang, Hao-Wei Chang, Jiye Cheng, et al.Proceedings of the National Academy of Sciences of the United States of America|November 25, 2025
Using gnotobiotic mice to decipher effects of gut microbiome repair in undernourished children on tuft and goblet cell functionYi Wang, Hao-Wei Chang, Jiye Cheng, et al.Ebiomedicine|June 4, 2024
A microbiota-directed complementary food intervention in 12-18-month-old Bangladeshi children improves linear growthIshita Mostafa, Matthew C Hibberd, Steven J Hartman, et al.Science Translational Medicine|May 19, 2017
The effects of micronutrient deficiencies on bacterial species from the human gut microbiotaMatthew C Hibberd, Meng Wu, Dmitry A Rodionov, et al.Pageof 4