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Genome Research|January 17, 2014
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammalsStefan Washietl, Manolis Kellis, Manuel GarberBioinformatics (Oxford, England)|June 21, 2011
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regionsMichael F Lin, Irwin Jungreis, Manolis KellisPlos One|April 2, 2013
Heterologous stop codon readthrough of metazoan readthrough candidates in yeastClara S Chan, Irwin Jungreis, Manolis KellisCell Systems|December 2, 2019
Reconstruction of Cell-type-Specific Interactomes at Single-Cell ResolutionShahin Mohammadi, Jose Davila-Velderrain, Manolis KellisNature Communications|October 27, 2020
A multiresolution framework to characterize single-cell state landscapesShahin Mohammadi, Jose Davila-Velderrain, Manolis KellisMethods in Molecular Biology (Clifton, N.J.)|March 19, 2014
Energy-based RNA consensus secondary structure prediction in multiple sequence alignmentsStefan Washietl, Stephan H Bernhart, Manolis KellisJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|September 17, 2013
Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and lossMukul S Bansal, Eric J Alm, Manolis KellisNature|March 9, 2004
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiaeManolis Kellis, Bruce W Birren, Eric S LanderGenome Research|November 9, 2007
Reliable prediction of regulator targets using 12 Drosophila genomesPouya Kheradpour, Alexander Stark, Sushmita Roy, et al.Arxiv|March 13, 2026
Greater than the Sum of Its Parts: Building Substructure into Protein Encoding ModelsRobert Calef, Arthur Liang, Manolis Kellis, et al.Pageof 34