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Bioinformatics (Oxford, England)|June 13, 2012
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and lossMukul S Bansal, Eric J Alm, Manolis KellisNature Biotechnology|July 16, 2013
Network deconvolution as a general method to distinguish direct dependencies in networksSoheil Feizi, Daniel Marbach, Muriel Médard, et al.Bioinformatics (Oxford, England)|July 6, 2016
SwiSpot: modeling riboswitches by spotting out switching sequencesMarco Barsacchi, Eva Maria Novoa, Manolis Kellis, et al.Proceedings of the National Academy of Sciences of the United States of America|January 18, 2008
The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplicationAviva Presser, Michael B Elowitz, Manolis Kellis, et al.Nucleic Acids Research|July 3, 2019
Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorizationDianbo Liu, Jose Davila-Velderrain, Zhizhuo Zhang, et al.Molecular Biology and Evolution|June 21, 2019
Elucidation of Codon Usage Signatures across the Domains of LifeEva Maria Novoa, Irwin Jungreis, Olivier Jaillon, et al.Bioinformatics (Oxford, England)|April 25, 2018
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and lossMukul S Bansal, Manolis Kellis, Misagh Kordi, et al.ACM Transactions on Knowledge Discovery From Data|August 24, 2010
Motif Discovery in Physiological Datasets: A Methodology for Inferring Predictive ElementsZeeshan Syed, Collin Stultz, Manolis Kellis, et al.Plos One|February 23, 2011
Error and error mitigation in low-coverage genome assembliesMelissa J Hubisz, Michael F Lin, Manolis Kellis, et al.Nature Communications|May 29, 2024
A polygenic score method boosted by non-additive modelsRikifumi Ohta, Yosuke Tanigawa, Yuta Suzuki, et al.Pageof 34