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Proceedings of the National Academy of Sciences of the United States of America|April 20, 2007
Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sitesXiaohui Xie, Tarjei S Mikkelsen, Andreas Gnirke, et al.Nature|February 20, 2015
Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's diseaseElizabeta Gjoneska, Andreas R Pfenning, Hansruedi Mathys, et al.Genome Biology|April 9, 2015
FRESCo: finding regions of excess synonymous constraint in diverse virusesRachel S Sealfon, Michael F Lin, Irwin Jungreis, et al.Arxiv|July 17, 2025
Spatia: Multimodal Model for Prediction and Generation of Spatial Cell PhenotypesZhenglun Kong, Mufan Qiu, John Boesen, et al.Nature Methods|August 7, 2019
Joint profiling of DNA methylation and chromatin architecture in single cellsGuoqiang Li, Yaping Liu, Yanxiao Zhang, et al.Genome Research|November 9, 2007
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAsJ Graham Ruby, Alexander Stark, Wendy K Johnston, et al.Genes & Development|February 27, 2007
Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryoJulia Zeitlinger, Robert P Zinzen, Alexander Stark, et al.Cell|March 10, 2007
Discrete small RNA-generating loci as master regulators of transposon activity in DrosophilaJulius Brennecke, Alexei A Aravin, Alexander Stark, et al.Nucleic Acids Research|July 27, 2025
Proteogenomics-enabled discovery of novel small open reading frame (sORF)-encoded polypeptides in human and mouse tissuesMei Yang, Yuting Xie, Lingshuo Wang, et al.Communications Biology|May 27, 2021
NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell dataLiang He, Jose Davila-Velderrain, Tomokazu S Sumida, et al.Pageof 34