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Bioinformatics (Oxford, England)|January 31, 2012
TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknotsMatthew G Seetin, David H MathewsJournal of Computational Chemistry|April 22, 2011
Automated RNA tertiary structure prediction from secondary structure and low-resolution restraintsMatthew G Seetin, David H MathewsMethods in Molecular Biology (Clifton, N.J.)|June 28, 2012
RNA structure prediction: an overview of methodsMatthew G Seetin, David H MathewsNucleic Acids Research|April 27, 2013
RNAstructure: Web servers for RNA secondary structure prediction and analysisStanislav Bellaousov, Jessica S Reuter, Matthew G Seetin, et al.Journal of Chemical Theory and Computation|May 8, 2014
Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNAAsaminew H Aytenfisu, Aleksandar Spasic, Matthew G Seetin, et al.Nucleic Acids Research|May 3, 2018
Improving RNA nearest neighbor parameters for helices by going beyond the two-state modelAleksandar Spasic, Kyle D Berger, Jonathan L Chen, et al.Methods in Molecular Biology (Clifton, N.J.)|October 19, 2013
Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocolMatthew G Seetin, Wipapat Kladwang, John P Bida, et al.Bioinformatics (Oxford, England)|February 26, 2005
Predicting a set of minimal free energy RNA secondary structures common to two sequencesDavid H MathewsCurrent Protocols in Bioinformatics|April 23, 2008
RNA secondary structure analysis using RNAstructureDavid H MathewsJournal of Molecular Biology|February 28, 2006
Revolutions in RNA secondary structure predictionDavid H MathewsPageof 18