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RNA (New York, N.Y.)|January 9, 2026
Deep Learning for RNA Secondary Structure Determination: Gauging Generalizability and Broadening the Scope of Traditional MethodsMarcell Szikszai, Ting-Yuan Wang, Ryan Krueger, et al.Nature Communications|February 22, 2022
Specific length and structure rather than high thermodynamic stability enable regulatory mRNA stem-loops to pause translationChen Bao, Mingyi Zhu, Inna Nykonchuk, et al.Biorxiv : the Preprint Server for Biology|November 24, 2021
LinearTurboFold: Linear-Time Global Prediction of Conserved Structures for RNA Homologs with Applications to SARS-CoV-2Sizhen Li, He Zhang, Liang Zhang, et al.Proceedings of the National Academy of Sciences of the United States of America|December 10, 2021
LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2Sizhen Li, He Zhang, Liang Zhang, et al.The Journal of Biological Chemistry|May 11, 2011
Biophysical analysis of influenza A virus RNA promoter at physiological temperaturesErin Noble, David H Mathews, Jonathan L Chen, et al.Biorxiv : the Preprint Server for Biology|June 4, 2026
Reparameterization of the Amber RNA Force Field Non-Bonded TermsAnees Mohammed Keedakkatt Puthenpeedikakkal, Chapin E Cavender, Louis G Smith, et al.Journal of Molecular Biology|November 11, 2022
Intrinsically Unstructured Sequences in the mRNA 3' UTR Reduce the Ability of Poly(A) Tail to Enhance TranslationWan-Jung C Lai, Mingyi Zhu, Margarita Belinite, et al.Proceedings of the National Academy of Sciences of the United States of America|March 19, 2013
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknotsChristine E Hajdin, Stanislav Bellaousov, Wayne Huggins, et al.Bioinformatics (Oxford, England)|September 13, 2019
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam searchLiang Huang, He Zhang, Dezhong Deng, et al.Biochemistry|October 13, 2007
NMR reveals the absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNANeelaabh Shankar, Tianbing Xia, Scott D Kennedy, et al.Pageof 18