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Nature Communications|March 12, 2022
Secondary structure prediction for RNA sequences including N<sup>6</sup>-methyladenosineElzbieta Kierzek, Xiaoju Zhang, Richard M Watson, et al.Arxiv|July 7, 2022
LinearAlifold: Linear-Time Consensus Structure Prediction for RNA AlignmentsApoorv Malik, Liang Zhang, Milan Gautam, et al.Journal of Molecular Biology|July 6, 2024
LinearAlifold: Linear-time consensus structure prediction for RNA alignmentsApoorv Malik, Liang Zhang, Milan Gautam, et al.Proceedings of the National Academy of Sciences of the United States of America|May 5, 2004
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structureDavid H Mathews, Matthew D Disney, Jessica L Childs, et al.RNA (New York, N.Y.)|February 14, 2018
Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformationAleksandar Spasic, Scott D Kennedy, Laura Needham, et al.Nature Communications|January 12, 2022
A small RNA that cooperatively senses two stacked metabolites in one pocket for gene controlGriffin M Schroeder, Chapin E Cavender, Maya E Blau, et al.Journal of Chemical Theory and Computation|October 31, 2018
Chemically Accurate Relative Folding Stability of RNA Hairpins from Molecular SimulationsLouis G Smith, Zhen Tan, Aleksandar Spasic, et al.Viruses|April 27, 2017
Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNAEric R Gamache, Jung H Doh, Justin Ritz, et al.Journal of Molecular Biology|October 27, 2009
Factors that determine the efficiency of HIV-1 strand transfer initiated at a specific siteSean T Rigby, Keith P Van Nostrand, April E Rose, et al.The Journal of Physical Chemistry. B|November 19, 2024
Modeling and NMR Data Elucidate the Structure of a G-Quadruplex-Ligand Interaction for a Pu22T-Cyclometalated Iridium(III) SystemCarly R Reed, Scott D Kennedy, Rachel H Horowitz, et al.Pageof 18