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Algorithms for Molecular Biology : AMB|November 5, 2013
Accelerating calculations of RNA secondary structure partition functions using GPUsHarry A Stern, David H MathewsNucleic Acids Research|November 23, 2014
Dynalign II: common secondary structure prediction for RNA homologs with domain insertionsYinghan Fu, Gaurav Sharma, David H MathewsNucleic Acids Research|December 6, 2011
Statistical evaluation of improvement in RNA secondary structure predictionZhenjiang Xu, Anthony Almudevar, David H MathewsBiophysical Journal|July 25, 2017
Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping DataZhen Tan, Gaurav Sharma, David H MathewsJournal of Chemical Theory and Computation|November 1, 2012
The Amber ff99 Force Field Predicts Relative Free Energy Changes for RNA Helix FormationAleksandar Spasic, John Serafini, David H MathewsBioinformatics (Oxford, England)|July 7, 2026
Probabilistic RNA designability via interpretable ensemble approximation and dynamic decompositionTianshuo Zhou, David H Mathews, Liang HuangCurrent Biology : CB|November 14, 2017
The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti GenomeZachary J Whitfield, Patrick T Dolan, Mark Kunitomi, et al.BMC Bioinformatics|April 21, 2007
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in DynalignArif Ozgun Harmanci, Gaurav Sharma, David H MathewsCurrent Protocols in Nucleic Acid Chemistry|April 23, 2008
RNA secondary structure predictionDavid H Mathews, Douglas H Turner, Michael ZukerBiochemistry|August 9, 2006
Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNAShenghua Duan, David H Mathews, Douglas H TurnerPageof 18