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BMC Bioinformatics|April 22, 2011
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequencesArif O Harmanci, Gaurav Sharma, David H MathewsF1000 Biology Reports|May 25, 2010
RNA pseudoknots: folding and findingBiao Liu, David H Mathews, Douglas H TurnerNucleic Acids Research|February 29, 2008
PARTS: probabilistic alignment for RNA joinT secondary structure predictionArif Ozgun Harmanci, Gaurav Sharma, David H MathewsCurrent Protocols|November 14, 2024
Using the RNAstructure Software Package to Predict Conserved RNA StructuresAbhinav Mittal, Sara E Ali, David H MathewsJournal of Molecular Biology|March 24, 2024
NNDB: An Expanded Database of Nearest Neighbor Parameters for Predicting Stability of Nucleic Acid Secondary StructuresAbhinav Mittal, Douglas H Turner, David H MathewsCurrent Protocols|July 24, 2023
RNA Secondary Structure Analysis Using RNAstructureSara E Ali, Abhinav Mittal, David H MathewsNucleic Acids Research|May 12, 2009
Stochastic sampling of the RNA structural alignment spaceArif Ozgun Harmanci, Gaurav Sharma, David H MathewsBioinformatics (Oxford, England)|November 22, 2015
AccessFold: predicting RNA-RNA interactions with consideration for competing self-structureLaura DiChiacchio, Michael F Sloma, David H MathewsSystematic Biology|November 18, 2010
Quantifying the impact of dependent evolution among sites in phylogenetic inferenceChris A Nasrallah, David H Mathews, John P HuelsenbeckBioinformatics (Oxford, England)|July 14, 2020
LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilitiesHe Zhang, Liang Zhang, David H Mathews, et al.Pageof 18