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Cell Host & Microbe|September 10, 2020
Clostridioides difficile: Sometimes It Pays To Be DifficultMatthew L Jenior, Jason A PapinCurrent Opinion in Microbiology|November 28, 2021
Computational approaches to understanding Clostridioides difficile metabolism and virulenceMatthew L Jenior, Jason A PapinBioinformatics (Oxford, England)|June 6, 2023
Reconstructor: a COBRApy compatible tool for automated genome-scale metabolic network reconstruction with parsimonious flux-based gap-fillingMatthew L Jenior, Emma M Glass, Jason A PapinNPJ Systems Biology and Applications|October 28, 2022
Genome-scale metabolic modeling reveals increased reliance on valine catabolism in clinical isolates of Klebsiella pneumoniaeMatthew L Jenior, Mary E Dickenson, Jason A PapinPlos Computational Biology|April 26, 2023
Network analysis of toxin production in Clostridioides difficile identifies key metabolic dependenciesDeborah A Powers, Matthew L Jenior, Glynis L Kolling, et al.Plos Computational Biology|February 7, 2022
Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructionsThomas J Moutinho, Benjamin C Neubert, Matthew L Jenior, et al.Plos Computational Biology|April 17, 2020
Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environmentsMatthew L Jenior, Thomas J Moutinho, Bonnie V Dougherty, et al.Biorxiv : the Preprint Server for Biology|August 23, 2023
Systems-ecology designed bacterial consortium protects from severe Clostridioides difficile infectionMatthew L Jenior, Jhansi L Leslie, Glynis L Kolling, et al.Msphere|July 14, 2021
Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial ResistanceLaura J Dunphy, Glynis L Kolling, Matthew L Jenior, et al.Msystems|October 5, 2021
Novel Drivers of Virulence in Clostridioides difficile Identified via Context-Specific Metabolic Network AnalysisMatthew L Jenior, Jhansi L Leslie, Deborah A Powers, et al.Pageof 15