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Plos Computational Biology|April 26, 2024
Spatial transcriptome-guided multi-scale framework connects P. aeruginosa metabolic states to oxidative stress biofilm microenvironmentTracy J Kuper, Mohammad Mazharul Islam, Shayn M Peirce-Cottler, et al.Plos Computational Biology|February 23, 2022
Comparative analyses of parasites with a comprehensive database of genome-scale metabolic modelsMaureen A Carey, Gregory L Medlock, Michał Stolarczyk, et al.Journal of Bacteriology|July 20, 2026
Integrating multi-omics data with network modeling to characterize Pseudomonas aeruginosa persister cell metabolismJoseph M Ficarrotta, Anna S Blazier, Aline Metris, et al.Cell Reports|March 10, 2021
Identifying functional metabolic shifts in heart failure with the integration of omics data and a heart-specific, genome-scale modelBonnie V Dougherty, Kristopher D Rawls, Glynis L Kolling, et al.Journal of Bacteriology|January 15, 2008
Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1Matthew A Oberhardt, Jacek Puchałka, Kimberly E Fryer, et al.Biotechnology and Bioengineering|November 13, 2025
Characterizing Spatiotemporal Expansion of Pseudomonas aeruginosa Communities in Polymer and Mucin Gel EnvironmentsMorgan S Kim, Glynis L Kolling, Katharina Ribbeck, et al.Sensors and Actuators. B, Chemical|July 2, 2020
Minimum Bactericidal Concentration of Ciprofloxacin to Pseudomonas aeruginosa Determined Rapidly Based on Pyocyanin SecretionYi Liu, John H Moore, Glynis L Kolling, et al.Plos One|August 3, 2017
Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactionsThomas J Moutinho, John C Panagides, Matthew B Biggs, et al.BMC Systems Biology|May 1, 2012
Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical diseaseArvind K Chavali, Anna S Blazier, Jose L Tlaxca, et al.Trends in Immunology|October 31, 2008
Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modelingArvind K Chavali, Erwin P Gianchandani, Kenneth S Tung, et al.Pageof 15