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Plos Computational Biology|February 29, 2024
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolismBonnie V Dougherty, Connor J Moore, Kristopher D Rawls, et al.Plos Biology|August 10, 2017
History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatmentPhillip Yen, Jason A PapinBioinformatics (Oxford, England)|December 22, 2010
Functional integration of a metabolic network model and expression data without arbitrary thresholdingPaul A Jensen, Jason A PapinCell Systems|January 14, 2020
Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine LearningGregory L Medlock, Jason A PapinJournal of Theoretical Biology|March 3, 2004
Topological analysis of mass-balanced signaling networks: a framework to obtain network properties including crosstalkJason A Papin, Bernhard O PalssonPlos Computational Biology|March 7, 2017
Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBAMatthew B Biggs, Jason A PapinBioinformatics (Oxford, England)|January 14, 2014
MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput dataPaul A Jensen, Jason A PapinPlos Computational Biology|April 12, 2019
Reconciling high-throughput gene essentiality data with metabolic network reconstructionsAnna S Blazier, Jason A PapinBiophysical Journal|July 9, 2004
The JAK-STAT signaling network in the human B-cell: an extreme signaling pathway analysisJason A Papin, Bernhard O PalssonAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference|December 8, 2009
A scalable systems analysis approach for regulated metabolic networksPaul A Jensen, Jason A PapinPageof 15