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Trends in Biochemical Sciences|November 17, 2004
Hierarchical thinking in network biology: the unbiased modularization of biochemical networksJason A Papin, Jennifer L Reed, Bernhard O PalssonMethods in Molecular Biology (Clifton, N.J.)|April 29, 2009
Flux balance analysis: interrogating genome-scale metabolic networksMatthew A Oberhardt, Arvind K Chavali, Jason A PapinMethods in Molecular Biology (Clifton, N.J.)|February 19, 2013
Linking genome-scale metabolic modeling and genome annotationEdik M Blais, Arvind K Chavali, Jason A PapinNature Microbiology|June 12, 2026
Genome-scale metabolic modelling identifies vaginal microbiome members as potential probioticsEmma M Glass, Glynis L Kolling, Jason A PapinBMC Genomics|July 21, 2017
Novel Plasmodium falciparum metabolic network reconstruction identifies shifts associated with clinical antimalarial resistanceMaureen A Carey, Jason A Papin, Jennifer L GulerGenome Research|May 9, 2002
Determination of redundancy and systems properties of the metabolic network of Helicobacter pylori using genome-scale extreme pathway analysisNathan D Price, Jason A Papin, Bernhard Ø PalssonTrends in Biochemical Sciences|April 18, 2006
Systems analyses characterize integrated functions of biochemical networksErwin P Gianchandani, David L Brautigan, Jason A PapinBMC Systems Biology|September 28, 2011
TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networksPaul A Jensen, Kyla A Lutz, Jason A PapinBiorxiv : the Preprint Server for Biology|February 17, 2023
Metabolic modeling of sex-specific tissue predicts mechanisms of differences in toxicological responsesConnor J Moore, Christopher P Holstege, Jason A PapinPlos Computational Biology|April 30, 2020
Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructionsGregory L Medlock, Thomas J Moutinho, Jason A PapinPageof 15