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Neoplasia (New York, N.Y.)|January 7, 2023
Targeted and explorative profiling of kallikrein proteases and global proteome biology of pancreatic ductal adenocarcinoma, chronic pancreatitis, and normal pancreas highlights disease-specific proteome remodellingJanina Werner, Patrick Bernhard, Miguel Cosenza-Contreras, et al.Journal of Proteome Research|May 3, 2022
MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for EveryoneNiko Pinter, Damian Glätzer, Matthias Fahrner, et al.Matrix Biology : Journal of the International Society for Matrix Biology|November 22, 2017
Identification of tissue damage, extracellular matrix remodeling and bacterial challenge as common mechanisms associated with high-risk cutaneous squamous cell carcinomasMelanie C Föll, Matthias Fahrner, Christine Gretzmeier, et al.Nature Communications|May 13, 2022
Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneityKlemens Fröhlich, Eva Brombacher, Matthias Fahrner, et al.Communications Biology|February 5, 2024
Comparative analyses of Netherton syndrome patients and Spink5 conditional knock-out mice uncover disease-relevant pathwaysEvgeniya Petrova, Jesús María López-Gay, Matthias Fahrner, et al.The Journal of Allergy and Clinical Immunology|September 20, 2021
Netherton syndrome subtypes share IL-17/IL-36 signature with distinct IFN-α and allergic responsesClaire Barbieux, Mathilde Bonnet des Claustres, Matthias Fahrner, et al.Plos Computational Biology|May 13, 2021
Fostering accessible online education using Galaxy as an e-learning platformBeatriz Serrano-Solano, Melanie C Föll, Cristóbal Gallardo-Alba, et al.Expert Review of Proteomics|October 3, 2023
A Galaxy of informatics resources for MS-based proteomicsSubina Mehta, Matthias Bernt, Matthew Chambers, et al.Pathologie (Heidelberg, Germany)|June 27, 2025
[Trop-2 expression in solid tumors : Expanded protein diagnostics within the molecular tumor board]Elaine-Pashupati Dopfer, Matthias Fahrner, Johanna Thiery, et al.Plos Computational Biology|January 9, 2023
Galaxy Training: A powerful framework for teaching!Saskia Hiltemann, Helena Rasche, Simon Gladman, et al.Pageof 2