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Methods in Molecular Biology (Clifton, N.J.)|March 24, 2016
Quantitative Comparison of Large-Scale DNA Enrichment Sequencing DataMatthias Lienhard, Lukas ChavezBioinformatics (Oxford, England)|November 15, 2013
MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experimentsMatthias Lienhard, Christina Grimm, Markus Morkel, et al.Nucleic Acids Research|December 4, 2016
QSEA-modelling of genome-wide DNA methylation from sequencing enrichment experimentsMatthias Lienhard, Sabrina Grasse, Jana Rolff, et al.Nature Protocols|September 9, 2016
Analyzing and interpreting genome data at the network level with ConsensusPathDBRalf Herwig, Christopher Hardt, Matthias Lienhard, et al.Nature Immunology|July 7, 2014
Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibilityGrégory Seumois, Lukas Chavez, Anna Gerasimova, et al.Proceedings of the National Academy of Sciences of the United States of America|July 23, 2015
Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesisJinsuk Kang, Matthias Lienhard, William A Pastor, et al.Journal of Molecular Biology|February 28, 2025
IsoTools 2.0: Software for Comprehensive Analysis of Long-read Transcriptome Sequencing DataYalan Bi, Tom Lukas Lankenau, Matthias Lienhard, et al.Frontiers in Bioscience (Landmark Edition)|June 24, 2022
Epirubicin Alters DNA Methylation Profiles Related to CardiotoxicityNhan Nguyen, Matthias Lienhard, Ralf Herwig, et al.F1000Research|May 21, 2019
An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arraysClarence K Mah, Jill P Mesirov, Lukas ChavezStem Cells and Development|December 18, 2010
Comparative analysis of human embryonic stem cell and induced pluripotent stem cell-derived hepatocyte-like cells reveals current drawbacks and possible strategies for improved differentiationJustyna Jozefczuk, Alessandro Prigione, Lukas Chavez, et al.Pageof 11