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Journal of Chemical Information and Modeling|November 8, 2007
Kernel approach to molecular similarity based on iterative graph similarityMatthias Rupp, Ewgenij Proschak, Gisbert SchneiderJournal of Computational Chemistry|May 23, 2007
Shapelets: possibilities and limitations of shape-based virtual screeningEwgenij Proschak, Matthias Rupp, Swetlana Derksen, et al.Chemistry Central Journal|September 21, 2007
PocketPicker: analysis of ligand binding-sites with shape descriptorsMartin Weisel, Ewgenij Proschak, Gisbert SchneiderJournal of Computational Chemistry|January 21, 2010
Protein-protein docking by shape-complementarity and property matchingTim Geppert, Ewgenij Proschak, Gisbert SchneiderJournal of Chemical Information and Modeling|December 19, 2008
Reaction-MQL: line notation for functional transformationFelix H Reisen, Gisbert Schneider, Ewgenij ProschakChemical Biology & Drug Design|June 20, 2008
Concept of combinatorial de novo design of drug-like molecules by particle swarm optimizationMarkus Hartenfeller, Ewgenij Proschak, Andreas Schüller, et al.Plos Computational Biology|February 24, 2012
DOGS: reaction-driven de novo design of bioactive compoundsMarkus Hartenfeller, Heiko Zettl, Miriam Walter, et al.Cell Cycle (Georgetown, Tex.)|February 9, 2011
Fate of primary cells at the G₁/S boundary after polo-like kinase 1 inhibition by SBE13Sarah Keppner, Ewgenij Proschak, Gisbert Schneider, et al.Proteomics|January 15, 2009
Form follows function: shape analysis of protein cavities for receptor-based drug designMartin Weisel, Ewgenij Proschak, Jan M Kriegl, et al.Journal of Chemical Information and Modeling|March 27, 2007
Molecular query language (MQL)--a context-free grammar for substructure matchingEwgenij Proschak, Jörg K Wegner, Andreas Schüller, et al.Pageof 45