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Msystems|June 29, 2021
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental ToleranceAnkita Kothari, Simon Roux, Hanqiao Zhang, et al.Microbiome|July 20, 2021
Glacier ice archives nearly 15,000-year-old microbes and phagesZhi-Ping Zhong, Funing Tian, Simon Roux, et al.Nucleic Acids Research|November 9, 2018
IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomesDavid Paez-Espino, Simon Roux, I-Min A Chen, et al.Nucleic Acids Research|October 29, 2020
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilitiesI-Min A Chen, Ken Chu, Krishnaveni Palaniappan, et al.Bioinformatics (Oxford, England)|June 16, 2021
efam: an expanded, metaproteome-supported HMM profile database of viral protein familiesAhmed A Zayed, Dominik Lücking, Mohamed Mohssen, et al.Frontiers in Microbiology|December 7, 2020
Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA PolymeraseMarike Palmer, Brian P Hedlund, Simon Roux, et al.Peerj|May 24, 2019
Optimizing de novo genome assembly from PCR-amplified metagenomesSimon Roux, Gareth Trubl, Danielle Goudeau, et al.Nucleic Acids Research|November 2, 2020
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated virusesSimon Roux, David Páez-Espino, I-Min A Chen, et al.Nature Communications|December 11, 2025
Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradientGareth Trubl, Simon Roux, Mikayla A Borton, et al.Current Opinion in Virology|November 15, 2021
Perspective on taxonomic classification of uncultivated virusesBas E Dutilh, Arvind Varsani, Yigang Tong, et al.Pageof 20