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Peerj|June 4, 2015
VirSorter: mining viral signal from microbial genomic dataSimon Roux, Francois Enault, Bonnie L Hurwitz, et al.Open Biology|December 17, 2013
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequencesSimon Roux, Mart Krupovic, Didier Debroas, et al.Medecine Sciences : M/S|January 24, 2023
[A better understanding of Earth's viruses thanks to metagenomes]Éric Olo Ndela, Louis-Marie Cobigo, Simon Roux, et al.Msystems|July 8, 2025
Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomesMatthew Kellom, Maureen Berg, I-Min A Chen, et al.Nature Communications|February 7, 2019
TGFβ/BMP immune signaling affects abundance and function of C. elegans gut commensalsMaureen Berg, David Monnin, Juhyun Cho, et al.Virus Evolution|March 2, 2018
Diversity and comparative genomics of chimeric viruses in Sphagnum-dominated peatlandsAchim Quaiser, Mart Krupovic, Alexis Dufresne, et al.Mbio|May 9, 2022
Virus-Host Interactions and Genetic Diversity of Antarctic Sea Ice BacteriophagesTatiana A Demina, Anne-Mari Luhtanen, Simon Roux, et al.Frontiers in Microbiology|April 9, 2015
Genomic characteristics and environmental distributions of the uncultivated Far-T4 phagesSimon Roux, François Enault, Viviane Ravet, et al.Microbiome|September 27, 2022
Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamicsHoon Je Seong, Simon Roux, Chung Yeon Hwang, et al.Current Biology : CB|July 4, 2023
Long-term CRISPR locus dynamics and stable host-virus co-existence in subsurface fractured shalesKaela K Amundson, Simon Roux, Jenna L Shelton, et al.Pageof 20