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Bioinformatics (Oxford, England)|May 7, 2016
FRAGSION: ultra-fast protein fragment library generation by IOHMM samplingDebswapna Bhattacharya, Badri Adhikari, Jilong Li, et al.Nucleic Acids Research|May 1, 2016
3Drefine: an interactive web server for efficient protein structure refinementDebswapna Bhattacharya, Jackson Nowotny, Renzhi Cao, et al.Scientific Reports|December 5, 2015
Improving Protein Fold Recognition by Deep Learning NetworksTaeho Jo, Jie Hou, Jesse Eickholt, et al.BMC Structural Biology|February 28, 2013
Designing and benchmarking the MULTICOM protein structure prediction systemJilong Li, Xin Deng, Jesse Eickholt, et al.Proteins|May 15, 2015
CONFOLD: Residue-residue contact-guided ab initio protein foldingBadri Adhikari, Debswapna Bhattacharya, Renzhi Cao, et al.BMC Bioinformatics|April 30, 2014
SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machinesRenzhi Cao, Zheng Wang, Yiheng Wang, et al.Computational and Structural Biotechnology Journal|July 21, 2025
A labeled dataset for AI-based cryo-EM map enhancementNabin Giri, Xiao Chen, Liguo Wang, et al.Briefings in Bioinformatics|June 11, 2024
CryoSegNet: accurate cryo-EM protein particle picking by integrating the foundational AI image segmentation model and attention-gated U-NetRajan Gyawali, Ashwin Dhakal, Liguo Wang, et al.Scientific Reports|August 18, 2023
Crystal structure of domain of unknown function 507 (DUF507) reveals a new protein foldCole E McKay, Jianlin Cheng, John J TannerBiomolecules|May 24, 2024
A Survey of Deep Learning Methods for Estimating the Accuracy of Protein Quaternary Structure ModelsXiao Chen, Jian Liu, Nolan Park, et al.Pageof 30